OSGeoLive ol13

GeoPandas Build from Source

$ ipython3
In [1]: import geopandas as gpd
In [2]: gpd.show_versions()

SYSTEM INFO
-----------
python     : 3.6.8 (default, Jan 14 2019, 11:02:34)  [GCC 8.0.1 20180414 (experimental) [trunk revision 259383]]
executable : /usr/bin/python3
machine    : Linux-5.0.0-23-generic-x86_64-with-Ubuntu-18.04-bionic

GEOS, GDAL, PROJ INFO
---------------------
GEOS       : 3.9.0
GEOS lib   : /usr/local/lib/libgeos_c.so
GDAL       : 2.4.2
GDAL data dir: /usr/share/gdal
PROJ       : None
PROJ data dir: /usr/share/proj/

PYTHON DEPENDENCIES
-------------------
geopandas  : 0.6.2
pandas     : 0.23.3
fiona      : 1.8.6
numpy      : 1.13.3
shapely    : 1.6.4
rtree      : 0.8.3
pyproj     : 1.9.5.1
matplotlib : 2.1.1
mapclassify: None
pysal      : None
geopy      : None
psycopg2   : 2.7.4 (dt dec pq3 ext lo64)

however, from Jupyter Notebook server v5.2.2 / Python3

In [2]: gpd.show_versions()

SYSTEM INFO
-----------
python     : 3.6.8 (default, Jan 14 2019, 11:02:34)  [GCC 8.0.1 20180414 (experimental) [trunk revision 259383]]
executable : /usr/bin/python3
machine    : Linux-5.0.0-23-generic-x86_64-with-Ubuntu-18.04-bionic

GEOS, GDAL, PROJ INFO
---------------------
GEOS       : 3.7.1
GEOS lib   : /usr/lib/x86_64-linux-gnu/libgeos_c.so
GDAL       : 2.4.2
GDAL data dir: /usr/share/gdal
PROJ       : None
PROJ data dir: /usr/share/proj/

PYTHON DEPENDENCIES
-------------------
geopandas  : 0.6.2
pandas     : 0.23.3
fiona      : 1.8.6
numpy      : 1.13.3
shapely    : 1.6.4
rtree      : 0.8.3
pyproj     : 1.9.5.1
matplotlib : 2.1.1
mapclassify: None
pysal      : None
geopy      : None
psycopg2   : 2.7.4 (dt dec pq3 ext lo64)