OSGeoLive **ol13** GeoPandas Build from Source {{{ $ ipython3 In [1]: import geopandas as gpd In [2]: gpd.show_versions() SYSTEM INFO ----------- python : 3.6.8 (default, Jan 14 2019, 11:02:34) [GCC 8.0.1 20180414 (experimental) [trunk revision 259383]] executable : /usr/bin/python3 machine : Linux-5.0.0-23-generic-x86_64-with-Ubuntu-18.04-bionic GEOS, GDAL, PROJ INFO --------------------- GEOS : 3.9.0 GEOS lib : /usr/local/lib/libgeos_c.so GDAL : 2.4.2 GDAL data dir: /usr/share/gdal PROJ : None PROJ data dir: /usr/share/proj/ PYTHON DEPENDENCIES ------------------- geopandas : 0.6.2 pandas : 0.23.3 fiona : 1.8.6 numpy : 1.13.3 shapely : 1.6.4 rtree : 0.8.3 pyproj : 1.9.5.1 matplotlib : 2.1.1 mapclassify: None pysal : None geopy : None psycopg2 : 2.7.4 (dt dec pq3 ext lo64) }}} however, from Jupyter Notebook server v5.2.2 / Python3 {{{ In [2]: gpd.show_versions() SYSTEM INFO ----------- python : 3.6.8 (default, Jan 14 2019, 11:02:34) [GCC 8.0.1 20180414 (experimental) [trunk revision 259383]] executable : /usr/bin/python3 machine : Linux-5.0.0-23-generic-x86_64-with-Ubuntu-18.04-bionic GEOS, GDAL, PROJ INFO --------------------- GEOS : 3.7.1 GEOS lib : /usr/lib/x86_64-linux-gnu/libgeos_c.so GDAL : 2.4.2 GDAL data dir: /usr/share/gdal PROJ : None PROJ data dir: /usr/share/proj/ PYTHON DEPENDENCIES ------------------- geopandas : 0.6.2 pandas : 0.23.3 fiona : 1.8.6 numpy : 1.13.3 shapely : 1.6.4 rtree : 0.8.3 pyproj : 1.9.5.1 matplotlib : 2.1.1 mapclassify: None pysal : None geopy : None psycopg2 : 2.7.4 (dt dec pq3 ext lo64) }}}