Opened 2 years ago
Closed 5 weeks ago
#2393 closed enhancement (fixed)
python3 pystac update
Reported by: | darkblueb | Owned by: | |
---|---|---|---|
Priority: | major | Milestone: | OSGeoLive17.0 |
Component: | OSGeoLive | Keywords: | python |
Cc: | osgeolive@… |
Description
ol15 build 179 -- python3 pySTAC dot-deb 1.4.0 exists but v1.6 is current
user@osgeolive:~$ pip3 install --user --upgrade-strategy=only-if-needed pystac Collecting pystac Downloading pystac-1.6.1-py3-none-any.whl (146 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 146.0/146.0 KB 395.0 kB/s eta 0:00:00 Requirement already satisfied: python-dateutil>=2.7.0 in /usr/lib/python3/dist-packages (from pystac) (2.8.1) Installing collected packages: pystac Successfully installed pystac-1.6.1 user@osgeolive:~$ apt search pystac Sorting... Done Full Text Search... Done python3-pystac/jammy 1.4.0-0~jammy0 all PySTAC is a library for working with SpatioTemporal Asset Catalog in Python 3. python3-pystac-client/jammy 0.4.0-0~jammy0 all A Python client for working with STAC Catalogs and APIs.
note: we can drop ipyleaflet
in the ISO, it is currently not working.
python3-ipyleaflet/jammy,now 0.17.0-0~jammy1 all [installed] A Jupyter widget for dynamic Leaflet maps.
Change History (17)
comment:1 by , 2 years ago
comment:2 by , 2 years ago
per comments at FOSS4G STAC presentation
FOSS4G Pete Gadomski pete.gadomski at Gmail pystac v1.6.1 r/w static collections, catalogs, objects pystac-client v0.4.0 r/w stac api stactools v0.4.1 create,modify utils odc-stac v0.3.1 load stac assets into xarray
compare to ol15 RC1
pystac v1.4.0 r/w static collections, catalogs, objects pystac-client n/a r/w stac api stactools n/a create,modify utils odc-stac v0.3.0 load stac assets into xarray repos stac-utils/pystac stac-utils/pystac-client stac-utils/stactools opendatacube/odc-stac
comment:3 by , 2 years ago
Cc: | added |
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comment:4 by , 2 years ago
Milestone: | OSGeoLive15.0 → OSGeoLive16.0 |
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Ticket retargeted after milestone closed
comment:5 by , 19 months ago
ol16 alpha3 build
pystac v1.4.0 r/w static collections, catalogs, objects pystac-client n/a r/w stac api stactools n/a create,modify utils odc-stac v0.3.1 load stac assets into xarray odc-geo v0.2.1 projection aware Geometry comp. w/ Open Data Cube
comment:7 by , 15 months ago
ol16rc1
user@osgeolive:~$ pip3 install --user stac-asset[cli] Collecting stac-asset[cli] Downloading stac_asset-0.2.2-py3-none-any.whl (33 kB) Collecting aiobotocore>=2.5.0 Downloading aiobotocore-2.6.0-py3-none-any.whl (73 kB) ━*********************************━━ 73.4/73.4 KB 267.2 kB/s eta 0:00:00 Collecting yarl>=1.9.2 Downloading yarl-1.9.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (268 kB) ━*********************************━━ 268.8/268.8 KB 274.9 kB/s eta 0:00:00 Requirement already satisfied: python-dateutil>=2.7.0 in /usr/lib/python3/dist-packages (from stac-asset[cli]) (2.8.1) Collecting pystac>=1.7.3 Downloading pystac-1.8.3-py3-none-any.whl (175 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 175.6/175.6 KB 278.1 kB/s eta 0:00:00 Collecting aiohttp>=3.8.4 Downloading aiohttp-3.8.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.0 MB) ━*********************************━━ 1.0/1.0 MB 270.1 kB/s eta 0:00:00 Collecting aiofiles>=23.1.0 Downloading aiofiles-23.2.1-py3-none-any.whl (15 kB) Collecting tabulate~=0.9.0 Downloading tabulate-0.9.0-py3-none-any.whl (35 kB) Collecting click-logging~=1.0.1 Downloading click_logging-1.0.1-py2.py3-none-any.whl (6.6 kB) Collecting click~=8.1.5 Downloading click-8.1.7-py3-none-any.whl (97 kB) ━*********************************━━ 97.9/97.9 KB 252.1 kB/s eta 0:00:00 Collecting tqdm~=4.66.1 Downloading tqdm-4.66.1-py3-none-any.whl (78 kB) ━*********************************━━ 78.3/78.3 KB 285.4 kB/s eta 0:00:00 Collecting botocore<1.31.18,>=1.31.17 Downloading botocore-1.31.17-py3-none-any.whl (11.1 MB) ━**********************************━ 11.1/11.1 MB 280.4 kB/s eta 0:00:00 Collecting aioitertools<1.0.0,>=0.5.1 Downloading aioitertools-0.11.0-py3-none-any.whl (23 kB) Successfully installed aiobotocore-2.6.0 aiofiles-23.2.1 aiohttp-3.8.5 aioitertools-0.11.0 botocore-1.31.17 click-8.1.7 click-logging-1.0.1 pystac-1.8.3 stac-asset-0.2.2 tabulate-0.9.0 tqdm-4.66.1 yarl-1.9.2
comment:8 by , 9 months ago
ubuntu-gis https://launchpad.net/~ubuntugis/+archive/ubuntu/ubuntugis-experimental/+packages
pystac Changelog shows
# Changelog All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). ## [Unreleased] ## [v0.7.5] - 2023-09-05 ### Fixed - `--matched` flag in CLI [#588](https://github.com/stac-utils/pystac-client/pull/588) ## [v0.7.4] - 2023-09-05 ### Changed - Don't provide a `limit` by default, trust the server to know its limits [#584](https://github.com/stac-utils/pystac-client/pull/584) ## [v0.7.3] - 2023-08-21 ### Changed
comment:9 by , 9 months ago
testing
pystac_client-0.7.6 pystac-1.9.0 ~/srcs_vm16/tmp_pystac/stac-validator-3.3.2 $ pytest-3 tests ================================================ test session starts ================================================ platform linux -- Python 3.10.12, pytest-6.2.5, py-1.10.0, pluggy-0.13.0 rootdir: tmp_pystac/stac-validator-3.3.2 plugins: mypy-0.10.3, hydra-core-1.3.2, bdd-3.2.1, flaky-3.7.0, django-3.5.1 collected 64 items tests/test_assets.py F.. tests/test_core.py .......... tests/test_custom.py ........... tests/test_default.py .s...... tests/test_extensions.py s.......... tests/test_links.py .. tests/test_recursion.py .......... tests/test_sys_exit.py ... tests/test_validate_dict.py ... tests/test_validate_item_collection.py ...
comment:10 by , 7 months ago
Milestone: | OSGeoLive16.0 → OSGeoLive17.0 |
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Ticket retargeted after milestone closed
comment:11 by , 3 months ago
odc-stac 0.3.1-0~noble0
not yet updated
pystac 1.9.0
current release pystac
https://github.com/stac-utils/pystac/releases/tag/v1.10.1
newly added
stac-check 1.3.3+ds-2~noble0
stactools 0.5.3-2~noble0
#--
comment:12 by , 3 months ago
ol17a1
user@osgeolive:~/stac-validator-3.3.2$ pytest tests/ ================================ test session starts ================================= platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.4.0 rootdir: /home/user/stac-validator-3.3.2 collected 64 items tests/test_assets.py F.. [ 4%] tests/test_core.py .......... [ 20%] tests/test_custom.py ........... [ 37%] tests/test_default.py .s...... [ 50%] tests/test_extensions.py s.......... [ 67%] tests/test_links.py .. [ 70%] tests/test_recursion.py .......... [ 85%] tests/test_sys_exit.py FFF [ 90%] tests/test_validate_dict.py ... [ 95%] tests/test_validate_item_collection.py ... [100%]
comment:13 by , 2 months ago
ol17_build83
odc-stac 0.3.1-0~noble0
not yet updated ? It looks like
odc-stac
is now at version 3 dot ten. The source tree CHANGELOG includes## [v0.3.1] - 2022-06-28
The installed version has not been tested for compatibility with python 3.12
comment:14 by , 6 weeks ago
ol17_build92
user@osgeolive:~$ pip3 install --upgrade --break-system-packages pystac-client ... Requirement already satisfied: pystac-client in /usr/lib/python3/dist-packages (0.7.6) Collecting pystac-client Downloading pystac_client-0.8.5-py3-none-any.whl.metadata (5.1 kB) Requirement already satisfied: requests>=2.28.2 in /usr/lib/python3/dist-packages (from pystac-client) (2.31.0) Collecting pystac>=1.10.0 (from pystac[validation]>=1.10.0->pystac-client) Downloading pystac-1.11.0-py3-none-any.whl.metadata (4.5 kB) Requirement already satisfied: python-dateutil>=2.8.2 in /usr/lib/python3/dist-packages (from pystac-client) (2.8.2) Collecting jsonschema~=4.18 (from pystac[validation]>=1.10.0->pystac-client) Downloading jsonschema-4.23.0-py3-none-any.whl.metadata (7.9 kB) Requirement already satisfied: attrs>=22.2.0 in /usr/lib/python3/dist-packages (from jsonschema~=4.18->pystac[validation]>=1.10.0->pystac-client) (23.2.0) Collecting jsonschema-specifications>=2023.03.6 (from jsonschema~=4.18->pystac[validation]>=1.10.0->pystac-client) Downloading jsonschema_specifications-2024.10.1-py3-none-any.whl.metadata (3.0 kB) Collecting referencing>=0.28.4 (from jsonschema~=4.18->pystac[validation]>=1.10.0->pystac-client) Downloading referencing-0.35.1-py3-none-any.whl.metadata (2.8 kB) Collecting rpds-py>=0.7.1 (from jsonschema~=4.18->pystac[validation]>=1.10.0->pystac-client) Downloading rpds_py-0.20.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.2 kB) Downloading pystac_client-0.8.5-py3-none-any.whl (41 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.9/41.9 kB 273.6 kB/s eta 0:00:00 Downloading pystac-1.11.0-py3-none-any.whl (183 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 183.9/183.9 kB 278.2 kB/s eta 0:00:00 Downloading jsonschema-4.23.0-py3-none-any.whl (88 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 88.5/88.5 kB 272.7 kB/s eta 0:00:00 Downloading jsonschema_specifications-2024.10.1-py3-none-any.whl (18 kB) Downloading referencing-0.35.1-py3-none-any.whl (26 kB) Downloading rpds_py-0.20.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (357 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 358.0/358.0 kB 272.2 kB/s eta 0:00:00 Installing collected packages: rpds-py, pystac, referencing, jsonschema-specifications, jsonschema, pystac-client WARNING: The script jsonschema is installed in '/home/user/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. WARNING: The script stac-client is installed in '/home/user/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. pywps 4.6.0 requires geotiff, which is not installed. Successfully installed jsonschema-4.23.0 jsonschema-specifications-2024.10.1 pystac-1.11.0 pystac-client-0.8.5 referencing-0.35.1 rpds-py-0.20.0
/var/lib/dpkg/info/python3-pystac-client.list
comment:15 by , 6 weeks ago
https://pypi.org/project/geotiff/
user@osgeolive:~$ pip3 install --break-system-packages geotiff ... Collecting geotiff Downloading geotiff-0.2.10-py3-none-any.whl.metadata (7.2 kB) Collecting tifffile!=2022.4.28,>=2021.7.4 (from geotiff) Downloading tifffile-2024.9.20-py3-none-any.whl.metadata (32 kB) Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (from geotiff) (1.26.4) Requirement already satisfied: pyproj in /usr/lib/python3/dist-packages (from geotiff) (3.6.1) Collecting zarr<2.13,>=2.12.0 (from geotiff) Downloading zarr-2.12.0-py3-none-any.whl.metadata (4.6 kB) Collecting asciitree (from zarr<2.13,>=2.12.0->geotiff) Downloading asciitree-0.3.3.tar.gz (4.0 kB) Preparing metadata (setup.py) ... done Collecting fasteners (from zarr<2.13,>=2.12.0->geotiff) Downloading fasteners-0.19-py3-none-any.whl.metadata (4.9 kB) Collecting numcodecs>=0.6.4 (from zarr<2.13,>=2.12.0->geotiff) Downloading numcodecs-0.13.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB) Requirement already satisfied: certifi in /usr/lib/python3/dist-packages (from pyproj->geotiff) (2023.11.17) Downloading geotiff-0.2.10-py3-none-any.whl (19 kB) Downloading tifffile-2024.9.20-py3-none-any.whl (228 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 228.2/228.2 kB 271.8 kB/s eta 0:00:00 Downloading zarr-2.12.0-py3-none-any.whl (185 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 185.8/185.8 kB 283.1 kB/s eta 0:00:00 Downloading numcodecs-0.13.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.9/8.9 MB 251.8 kB/s eta 0:00:00 Downloading fasteners-0.19-py3-none-any.whl (18 kB) Building wheels for collected packages: asciitree Building wheel for asciitree (setup.py) ... done Created wheel for asciitree: filename=asciitree-0.3.3-py3-none-any.whl size=5033 sha256=725f9237de51b51efe39a3f84758ae5339e956e54c961d509385dcb2778b9875 Stored in directory: /home/user/.cache/pip/wheels/a5/d7/98/f56ae733748cd0fa577172bda0e73e0b1f1793c98e09b9e458 Successfully built asciitree Installing collected packages: asciitree, tifffile, numcodecs, fasteners, zarr, geotiff WARNING: The scripts lsm2bin, tiff2fsspec, tiffcomment and tifffile are installed in '/home/user/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. Successfully installed asciitree-0.3.3 fasteners-0.19 geotiff-0.2.10 numcodecs-0.13.1 tifffile-2024.9.20 zarr-2.12.0
comment:16 by , 5 weeks ago
ol17_build95
- running
pytest-3
onodc-stac-0.3.10
fails. sudo apt install python3-referencing
does improve but not cure- per AlexLeith; tests (and libs?) need a newer
jsonschema
- available
python3-jsonschema (4.10.3-2ubuntu1)
does not fix the tests pip3 install jsonschema
(4.23.0-py3) does fix the tests
user@osgeolive:~/Downloads$ pip3 install --upgrade --break-system-packages jsonschema Defaulting to user installation because normal site-packages is not writeable Requirement already satisfied: jsonschema in /usr/lib/python3/dist-packages (4.10.3) Collecting jsonschema Downloading jsonschema-4.23.0-py3-none-any.whl.metadata (7.9 kB) Requirement already satisfied: attrs>=22.2.0 in /usr/lib/python3/dist-packages (from jsonschema) (23.2.0) Collecting jsonschema-specifications>=2023.03.6 (from jsonschema) Downloading jsonschema_specifications-2024.10.1-py3-none-any.whl.metadata (3.0 kB) Requirement already satisfied: referencing>=0.28.4 in /usr/lib/python3/dist-packages (from jsonschema) (0.31.0) Requirement already satisfied: rpds-py>=0.7.1 in /usr/lib/python3/dist-packages (from jsonschema) (0.12.0) Downloading jsonschema-4.23.0-py3-none-any.whl (88 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 88.5/88.5 kB 288.7 kB/s eta 0:00:00 Downloading jsonschema_specifications-2024.10.1-py3-none-any.whl (18 kB) Installing collected packages: jsonschema-specifications, jsonschema WARNING: The script jsonschema is installed in '/home/user/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. pywps 4.6.0 requires geotiff, which is not installed. Successfully installed jsonschema-4.23.0 jsonschema-specifications-2024.10.1 user@osgeolive:~/Downloads$ user@osgeolive:~/Downloads$ echo $PATH /home/user/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin user@osgeolive:~/Downloads$ PATH=$PATH:/home/user/.local/bin/ user@osgeolive:~/Downloads$ ls demo_odcgeo.py osgeo-desktop_1.png gdal-data_3.9.3+dfsg-1~noble0_all.deb osgeo-desktop_2.png gdal-plugins_3.9.3+dfsg-1~noble0_amd64.deb python3-datacube_1.8.19-0~noble1_all.deb libgdal35_3.9.3+dfsg-1~noble0_amd64.deb python3-deprecat_2.1.3-0~noble0_all.deb libgdal-dev_3.9.3+dfsg-1~noble0_amd64.deb python3-eodag_2.12.1-1~noble0_all.deb odc-geo-0.4.8/ python3-gdal_3.9.3+dfsg-1~noble0_amd64.deb odc-geo-0.4.8.tar.gz python3-odc-geo_0.4.8-0~noble0_all.deb odc-stac-0.3.10/ python3-odc-stac_0.3.10-0~noble0_all.deb odc-stac-0.3.10.tar.gz user@osgeolive:~/Downloads$ pytest-3 odc-stac-0.3.10/tests/ ========================================= test session starts ========================================= platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.4.0 rootdir: /home/user/Downloads/odc-stac-0.3.10 plugins: anyio-4.2.0 collected 60 items / 1 skipped odc-stac-0.3.10/tests/test_eo3converter.py .......... [ 16%] odc-stac-0.3.10/tests/test_load.py ... [ 21%] odc-stac-0.3.10/tests/test_mdtools.py .............x...................... [ 81%] odc-stac-0.3.10/tests/test_model.py ........... [100%] ========================================== warnings summary =========================================== ../../../usr/lib/python3/dist-packages/xarray/core/duck_array_ops.py:215: 2 warnings tests/test_load.py: 4 warnings tests/test_model.py: 10 warnings /usr/lib/python3/dist-packages/xarray/core/duck_array_ops.py:215: DeprecationWarning: parsing timezone aware datetimes is deprecated; this will raise an error in the future return data.astype(dtype, **kwargs) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 59 passed, 1 skipped, 1 xfailed, 16 warnings in 8.22s ========================
note that
python3-odc-stac/jammy,jammy 0.3.1-0~jammy0 all
is now available