Opened 10 years ago
Closed 10 years ago
#1271 closed enhancement (fixed)
matplotlib - then and now
| Reported by: | darkblueb | Owned by: | |
|---|---|---|---|
| Priority: | major | Milestone: | OSGeoLive7.9 |
| Component: | OSGeoLive | Keywords: | iPython, notebook, matplotlib |
| Cc: |
Description
many packages in UbuntuGIS-unstable refer to matplotlib
python-matplotlib (1.1.1~rc1+git20120423-0ubuntu1 Ubuntu:12.04/precise [i386])
but, iPython notebook - SciPy - matplotlib is on version 1.3
there have been substantial improvements to matplotlib and iPython Notebook since Ubuntu 12.04 was finished.
Attachments (2)
Change history (19)
comment:1 by , 10 years ago
comment:2 by , 10 years ago
FYI matplotlib will be updated to version 1.3 in Trusty (ubuntu 13.04) which we will use for the next live dvd. https://launchpad.net/ubuntu/+source/matplotlib Any effort done is therefore only useful for this live dvd.
comment:3 by , 10 years ago
| Milestone: | → OSGeoLive8.0 |
|---|
I agree that this should be solved in 8.0 unless someone can provide a fast backport from Trusty to Precise.
comment:4 by , 10 years ago
| Milestone: | OSGeoLive8.0 → OSGeoLive7.9 |
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comment:5 by , 10 years ago
Today the iPython team responded with links to two repos.. One is straight Ubuntu 12.04, the other is all Debian (Neuroscience).
I added the jtaylor PPA to an installed recent alpha build, and got this result
user@live-nightly79a:~$ sudo apt-get install ipython Reading package lists... Done Building dependency tree Reading state information... Done The following extra packages will be installed: fonts-font-awesome ipython-notebook ipython-notebook-common ipython-qtconsole libjs-highlight libjs-jquery-ui libjs-marked Suggested packages: ipython-doc libjs-jquery-ui-docs Recommended packages: javascript-common The following NEW packages will be installed: fonts-font-awesome libjs-highlight libjs-jquery-ui libjs-marked The following packages will be upgraded: ipython ipython-notebook ipython-notebook-common ipython-qtconsole 4 upgraded, 4 newly installed, 0 to remove and 22 not upgraded. Need to get 2,660 kB of archives. After this operation, 6,420 kB of additional disk space will be used. Do you want to continue [Y/n]? Get:1 http://mirror.uoregon.edu/ubuntu/ precise/universe libjs-jquery-ui all 1.8.ooops.18+dfsg-1 [322 kB] Get:2 http://ppa.launchpad.net/jtaylor/ipython/ubuntu/ precise/main fonts-font-awesome all 4.0.0~dfsg-1~ubuntu12.04.1~ppa1 [270 kB] Get:3 http://ppa.launchpad.net/jtaylor/ipython/ubuntu/ precise/main ipython-qtconsole all 1.1.0-1~ubuntu12.04.1~ppa1 [81.9 kB] Get:4 http://ppa.launchpad.net/jtaylor/ipython/ubuntu/ precise/main libjs-highlight all 7.4+ds-1~ubuntu12.04.1~ppa2 [140 kB] Get:5 http://ppa.launchpad.net/jtaylor/ipython/ubuntu/ precise/main libjs-marked all 0.3.0+dfsg-1~ubuntu12.04.1~ppa1 [13.0 kB] Get:6 http://ppa.launchpad.net/jtaylor/ipython/ubuntu/ precise/main ipython-notebook all 1.1.0-1~ubuntu12.04.1~ppa1 [32.2 kB] Get:7 http://ppa.launchpad.net/jtaylor/ipython/ubuntu/ precise/main ipython-notebook-common all 1.1.0-1~ubuntu12.04.1~ppa1 [1,019 kB] Get:8 http://ppa.launchpad.net/jtaylor/ipython/ubuntu/ precise/main ipython all 1.1.0-1~ubuntu12.04.1~ppa1 [782 kB] Fetched 2,660 kB in 4s (577 kB/s) Selecting previously unselected package fonts-font-awesome. (Reading database ... 258322 files and directories currently installed.) Unpacking fonts-font-awesome (from .../fonts-font-awesome_4.0.0~dfsg-1~ubuntu12.04.1~ppa1_all.deb) ... Preparing to replace ipython-qtconsole 0.13.2-1~ubuntu12.04.1 (using .../ipython-qtconsole_1.1.0-1~ubuntu12.04.1~ppa1_all.deb) ... Unpacking replacement ipython-qtconsole ... Selecting previously unselected package libjs-highlight. Unpacking libjs-highlight (from .../libjs-highlight_7.4+ds-1~ubuntu12.04.1~ppa2_all.deb) ... Selecting previously unselected package libjs-jquery-ui. Unpacking libjs-jquery-ui (from .../libjs-jquery-ui_1.8.ooops.18+dfsg-1_all.deb) ... Selecting previously unselected package libjs-marked. Unpacking libjs-marked (from .../libjs-marked_0.3.0+dfsg-1~ubuntu12.04.1~ppa1_all.deb) ... Preparing to replace ipython-notebook 0.13.2-1~ubuntu12.04.1 (using .../ipython-notebook_1.1.0-1~ubuntu12.04.1~ppa1_all.deb) ... Unpacking replacement ipython-notebook ... Preparing to replace ipython-notebook-common 0.13.2-1~ubuntu12.04.1 (using .../ipython-notebook-common_1.1.0-1~ubuntu12.04.1~ppa1_all.deb) ... Unpacking replacement ipython-notebook-common ... Preparing to replace ipython 0.13.2-1~ubuntu12.04.1 (using .../ipython_1.1.0-1~ubuntu12.04.1~ppa1_all.deb) ... Unpacking replacement ipython ... Processing triggers for fontconfig ... Processing triggers for desktop-file-utils ... Processing triggers for hicolor-icon-theme ... Processing triggers for man-db ... Setting up fonts-font-awesome (4.0.0~dfsg-1~ubuntu12.04.1~ppa1) ... Setting up ipython (1.1.0-1~ubuntu12.04.1~ppa1) ... Setting up ipython-qtconsole (1.1.0-1~ubuntu12.04.1~ppa1) ... Setting up libjs-highlight (7.4+ds-1~ubuntu12.04.1~ppa2) ... Setting up libjs-jquery-ui (1.8.ooops.18+dfsg-1) ... Setting up libjs-marked (0.3.0+dfsg-1~ubuntu12.04.1~ppa1) ... Setting up ipython-notebook-common (1.1.0-1~ubuntu12.04.1~ppa1) ... Setting up ipython-notebook (1.1.0-1~ubuntu12.04.1~ppa1) ...
comment:6 by , 10 years ago
testing iPython and iPython notebook, things are good.
The "pylab" side is not so good however. It seems that matplotlib should get an update (0.12 -> 0.13).
Using pip install, shows :
sudo pip install -U matplotlib ... Downloading matplotlib-1.3.1.tar.gz (42.2Mb): 42.2Mb downloaded ... The required version of distribute (>=0.6.28) is not available... (Currently using distribute 0.6.24dev-r0 (/usr/lib/python2.7/dist-packages)) ...
so, executed the following:
user@live-nightly79a:~$ sudo easy_install -U distribute user@live-nightly79a:~$ sudo apt-get install python-dev user@live-nightly79a:~$ sudo pip install -U matplotlib ... Successfully installed matplotlib numpy python-dateutil tornado pyparsing nose six backports.ssl-match-hostname Cleaning up...
by , 10 years ago
| Attachment: | qgis2_buildA3_post_ipython.png added |
|---|
comment:7 by , 10 years ago
diff of the python 2.7 environment, pre- and post-install of iPython 1.1 et al
diff live79a_post_ipy.txt ../shared/freeze_pre_ipy.txt 1a2 > apt-clone==0.2.1 5d5 < backports.ssl-match-hostname==3.4.0.2 19c19 < distribute==0.7.3 --- > distribute==0.6.24dev-r0 37a38 > ## FIXME: could not find svn URL in dependency_links for this package: 49c50 < ipython==1.1.0 --- > ipython==0.13.2 63c64 < matplotlib==1.3.1 --- > matplotlib==1.2.0 68,69c69,70 < nose==1.3.0 < numpy==1.8.0 --- > nose==1.1.2 > numpy==1.6.1 90a92 > PyICU==1.3 94c96 < pyparsing==2.0.1 --- > pyparsing==1.5.2 103c105 < python-dateutil==2.2 --- > python-dateutil==1.5 120c122 < six==1.5.2 --- > six==1.1.0 126c128 < tornado==3.2 --- > tornado==2.1
comment:8 by , 10 years ago
I have now checked QGis, both pre- and post-iPython 1.1, and the same, identical loading error occurs for fTools and gdalTools.
comment:9 by , 10 years ago
I would prefer to have all those applications pulled from deb files, as in IPython case.
comment:10 by , 10 years ago
comment:11 by , 10 years ago
As I suspected, we now have python conflicts:
Iris is bringing in "pip install matplotlib==1.2.0" while IPython uses: "pip install --upgrade matplotlib"
Same with numpy which is now built from scratch (gcc) 2 times in the iso creation process, once for IPython and once for Iris.
comment:13 by , 10 years ago
I disagree, IRIS being an actual geospatial library with an overview written just needs some more work and clarification. I can see that there is a newer version 1.6 (7.0 had 1.4). What's not clear is if the matplotlib can use a later version. Most deps listed on http://scitools.org.uk/iris/docs/latest/installing.html say "or later" but not all of them do. It is listed in the optional section, so I think modifying IRIS install to allow newer should work.
comment:14 by , 10 years ago
wildintellect +1
I propose we test latest matplotlib and if Iris doesn't work we revert to 1.2.0 until we move to trusty in 8.0
comment:15 by , 10 years ago
I am seeking ways to prove that the python environment in the current build is stable via testing and analysis.
One test:
- install 12.04.3
- svn co gisvm/trunk
- install selected setup.sh, install_ipython.sh, install_iris.sh
- take a VM snapshot
- sudo apt-get install python-matplotlib
- examine the environment carefully...
comment:16 by , 10 years ago
Please note that there is a matplotlib v1.2 installable via package from ppa:drescampbell/ppa. Using that PPA on a base 12.04.3 plus gisvm setup.sh, shows the following packages to-be-installed (see screenshot)
by , 10 years ago
| Attachment: | drescampbell-matplotlib.png added |
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comment:17 by , 10 years ago
| Resolution: | → fixed |
|---|---|
| Status: | new → closed |
new live7.9 issues, please use a new ticket
currently, the
qgispackage in Unstable refers to :python-matplotlib (1.1.1~rc1+git20120423-0ubuntu1 Ubuntu:12.04/precise [i386])also note:
python-gdal (1.10.0-1~precise1 ubuntugis-unstable:12.04/precise [i386])