Opened 8 years ago

Closed 6 years ago

#3063 closed defect (worksforme)

In grass 7.3, no shared object files libgrass_vector and libgrass_raster 7.1

Reported by: pvanbosgeo Owned by: grass-dev@…
Priority: normal Milestone: 7.4.0
Component: Default Version: unspecified
Keywords: Cc:
CPU: Unspecified Platform: Unspecified

Description

When staring up GRASS (v 7.3, r68671) I am getting the following error / warnings:

GRASS 7.3.svn (Data_latlon):~ > ERROR 1: libgrass_vector.7.1.svn.so: cannot open shared object file: No such file or directory
ERROR 1: libgrass_vector.7.1.svn.so: cannot open shared object file: No such file or directory
ERROR 1: libgrass_raster.7.1.svn.so: cannot open shared object file: No such file or directory
ERROR 1: libgrass_raster.7.1.svn.so: cannot open shared object file: No such file or directory

Change History (14)

in reply to:  description comment:1 by neteler, 8 years ago

Replying to pvanbosgeo:

When staring up GRASS (v 7.3, r68671) I am getting the following error / warnings:

GRASS 7.3.svn (Data_latlon):~ > ERROR 1: libgrass_vector.7.1.svn.so: cannot open shared object file: No such file or directory

You have version confusion on your system. If you compiled yourself, you need to redo that after a

make distclean

comment:2 by pvanbosgeo, 8 years ago

Strange, I did a complete clean compilation, or so I thought. Will try again, perhaps some files did not get removed properly.

comment:3 by pvanbosgeo, 8 years ago

I must be missing something obvious here, but this is what I do:

Remove my previous install

sudo rm -r /usr/local/grass7
rm -r .grass7

Completely new checkout

cd /home/paulo/Software/spatial/
svn checkout https://svn.osgeo.org/grass/grass/trunk grass7

Compile and run

cd grass7
./configure --prefix=/usr/local/grass7  --enable-64bit
make -j4
sudo make install
/usr/local/grass7/bin/grass73

Same result / warning as above

in reply to:  3 comment:4 by neteler, 8 years ago

Replying to pvanbosgeo:

I must be missing something obvious here,

BTW: please add which operating system you are using.

but this is what I do: Remove my previous install

ok, but we shure that the files are really gone.

Completely new checkout

No need to do that.

make distclean

is enough. To be double, sure run also next to find remaining garbage:

svn status --no-ignore

Compile and run

ok, now, within the session, run

which g.region
ldd `which g.region | grep grass`

in order to see where g.region is and which libraries it loads from where.

comment:5 by pvanbosgeo, 8 years ago

Sorry, my system is Linux Ubuntu 14.04 (x64). I did make sure the previous install is completely removed.

Running which g.region gives me

/usr/local/grass7/grass-7.3.svn/bin/g.region

Running ldd which g.region | grep grass gives me

linux-vdso.so.1 =>  (0x00007ffee6137000)
libgrass_gproj.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_gproj.7.3.svn.so (0x00007f6a781a9000)
libgrass_vector.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_vector.7.3.svn.so (0x00007f6a77f35000)
libgrass_g3d.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_g3d.7.3.svn.so (0x00007f6a77d14000)
libgrass_raster.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_raster.7.3.svn.so (0x00007f6a77ae9000)
libgrass_gis.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_gis.7.3.svn.so (0x00007f6a778a7000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f6a775a1000)
libproj.so.0 => /usr/lib/libproj.so.0 (0x00007f6a7734f000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f6a76f8a000)
libgdal.so.20 => /usr/local/gdal/lib/libgdal.so.20 (0x00007f6a75e9d000)
libgrass_dbmiclient.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_dbmiclient.7.3.svn.so (0x00007f6a75c92000)
libgrass_dbmibase.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_dbmibase.7.3.svn.so (0x00007f6a75a80000)
libgrass_dgl.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_dgl.7.3.svn.so (0x00007f6a75867000)
libgrass_dig2.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_dig2.7.3.svn.so (0x00007f6a7564e000)
libgrass_linkm.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_linkm.7.3.svn.so (0x00007f6a7544b000)
libgrass_rtree.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_rtree.7.3.svn.so (0x00007f6a75241000)
libgeos_c.so.1 => /usr/lib/libgeos_c.so.1 (0x00007f6a7501d000)
libgrass_btree2.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_btree2.7.3.svn.so (0x00007f6a74e17000)
libpq.so.5 => /usr/lib/libpq.so.5 (0x00007f6a74be8000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f6a749e4000)
libgrass_datetime.7.3.svn.so => /usr/local/grass7/grass-7.3.svn/lib/libgrass_datetime.7.3.svn.so (0x00007f6a747db000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f6a745c2000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f6a743a4000)
/lib64/ld-linux-x86-64.so.2 (0x00007f6a783b2000)
libfreexl.so.1 => /usr/local/lib/libfreexl.so.1 (0x00007f6a7419a000)
libodbc.so.1 => /usr/lib/x86_64-linux-gnu/libodbc.so.1 (0x00007f6a73f33000)
libodbcinst.so.1 => /usr/lib/x86_64-linux-gnu/libodbcinst.so.1 (0x00007f6a73d21000)
libkmldom.so.0 => /usr/lib/x86_64-linux-gnu/libkmldom.so.0 (0x00007f6a73a78000)
libkmlbase.so.0 => /usr/lib/x86_64-linux-gnu/libkmlbase.so.0 (0x00007f6a73862000)
libkmlengine.so.0 => /usr/lib/x86_64-linux-gnu/libkmlengine.so.0 (0x00007f6a7362e000)
libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007f6a73404000)
libjasper.so.1 => /usr/lib/x86_64-linux-gnu/libjasper.so.1 (0x00007f6a731ad000)
libnetcdf.so.7 => /usr/lib/libnetcdf.so.7 (0x00007f6a72e70000)
libhdf5.so.7 => /usr/lib/x86_64-linux-gnu/libhdf5.so.7 (0x00007f6a729d4000)
libmfhdf.so.0 => /usr/lib/libmfhdf.so.0 (0x00007f6a72798000)
libdf.so.0 => /usr/lib/libdf.so.0 (0x00007f6a7249b000)
libogdi.so.3.2 => /usr/lib/libogdi.so.3.2 (0x00007f6a7227a000)
libspatialite.so.5 => /usr/lib/x86_64-linux-gnu/libspatialite.so.5 (0x00007f6a71c7e000)
libsqlite3.so.0 => /usr/lib/x86_64-linux-gnu/libsqlite3.so.0 (0x00007f6a719c5000)
libpcre.so.3 => /lib/x86_64-linux-gnu/libpcre.so.3 (0x00007f6a71787000)
libcurl-gnutls.so.4 => /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so.4 (0x00007f6a71525000)
libxml2.so.2 => /usr/lib/x86_64-linux-gnu/libxml2.so.2 (0x00007f6a711be000)
libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f6a70eba000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f6a70ca4000)
libgeos-3.4.2.so => /usr/lib/libgeos-3.4.2.so (0x00007f6a70920000)
libssl.so.1.0.0 => /lib/x86_64-linux-gnu/libssl.so.1.0.0 (0x00007f6a706c1000)
libcrypto.so.1.0.0 => /lib/x86_64-linux-gnu/libcrypto.so.1.0.0 (0x00007f6a702e5000)
libkrb5.so.3 => /usr/lib/x86_64-linux-gnu/libkrb5.so.3 (0x00007f6a7001a000)
libcom_err.so.2 => /lib/x86_64-linux-gnu/libcom_err.so.2 (0x00007f6a6fe16000)
libgssapi_krb5.so.2 => /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2 (0x00007f6a6fbcf000)
libldap_r-2.4.so.2 => /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2 (0x00007f6a6f97e000)
libltdl.so.7 => /usr/lib/x86_64-linux-gnu/libltdl.so.7 (0x00007f6a6f774000)
liburiparser.so.1 => /usr/lib/liburiparser.so.1 (0x00007f6a6f55a000)
libminizip.so.0 => /usr/lib/x86_64-linux-gnu/libminizip.so.0 (0x00007f6a6f352000)
libjpeg.so.8 => /usr/lib/x86_64-linux-gnu/libjpeg.so.8 (0x00007f6a6f0fd000)
libhdf5_hl.so.7 => /usr/lib/x86_64-linux-gnu/libhdf5_hl.so.7 (0x00007f6a6eecd000)
libidn.so.11 => /usr/lib/x86_64-linux-gnu/libidn.so.11 (0x00007f6a6ec9a000)
librtmp.so.0 => /usr/lib/x86_64-linux-gnu/librtmp.so.0 (0x00007f6a6ea80000)
libgcrypt.so.11 => /lib/x86_64-linux-gnu/libgcrypt.so.11 (0x00007f6a6e800000)
libgnutls.so.26 => /usr/lib/x86_64-linux-gnu/libgnutls.so.26 (0x00007f6a6e542000)
liblber-2.4.so.2 => /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2 (0x00007f6a6e333000)
liblzma.so.5 => /lib/x86_64-linux-gnu/liblzma.so.5 (0x00007f6a6e111000)
libk5crypto.so.3 => /usr/lib/x86_64-linux-gnu/libk5crypto.so.3 (0x00007f6a6dee2000)
libkrb5support.so.0 => /usr/lib/x86_64-linux-gnu/libkrb5support.so.0 (0x00007f6a6dcd7000)
libkeyutils.so.1 => /lib/x86_64-linux-gnu/libkeyutils.so.1 (0x00007f6a6dad3000)
libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007f6a6d8b8000)
libsasl2.so.2 => /usr/lib/x86_64-linux-gnu/libsasl2.so.2 (0x00007f6a6d69d000)
libgssapi.so.3 => /usr/lib/x86_64-linux-gnu/libgssapi.so.3 (0x00007f6a6d45f000)
libgpg-error.so.0 => /lib/x86_64-linux-gnu/libgpg-error.so.0 (0x00007f6a6d25a000)
libtasn1.so.6 => /usr/lib/x86_64-linux-gnu/libtasn1.so.6 (0x00007f6a6d046000)
libp11-kit.so.0 => /usr/lib/x86_64-linux-gnu/libp11-kit.so.0 (0x00007f6a6ce04000)
libheimntlm.so.0 => /usr/lib/x86_64-linux-gnu/libheimntlm.so.0 (0x00007f6a6cbfb000)
libkrb5.so.26 => /usr/lib/x86_64-linux-gnu/libkrb5.so.26 (0x00007f6a6c973000)
libasn1.so.8 => /usr/lib/x86_64-linux-gnu/libasn1.so.8 (0x00007f6a6c6d2000)
libhcrypto.so.4 => /usr/lib/x86_64-linux-gnu/libhcrypto.so.4 (0x00007f6a6c49f000)
libroken.so.18 => /usr/lib/x86_64-linux-gnu/libroken.so.18 (0x00007f6a6c28a000)
libffi.so.6 => /usr/lib/x86_64-linux-gnu/libffi.so.6 (0x00007f6a6c082000)
libwind.so.0 => /usr/lib/x86_64-linux-gnu/libwind.so.0 (0x00007f6a6be59000)
libheimbase.so.1 => /usr/lib/x86_64-linux-gnu/libheimbase.so.1 (0x00007f6a6bc4b000)
libhx509.so.5 => /usr/lib/x86_64-linux-gnu/libhx509.so.5 (0x00007f6a6ba02000)
libcrypt.so.1 => /lib/x86_64-linux-gnu/libcrypt.so.1 (0x00007f6a6b7c9000)

comment:6 by neteler, 8 years ago

I see:

/usr/local/grass7/grass-7.3.svn/lib/libgrass_vector.7.3.svn.so

all good now? g.region -p works?

comment:7 by pvanbosgeo, 8 years ago

Yes, g.region -p seems to work. What is still there at startup is those

ERROR 1: libgrass_vector.7.1.svn.so: cannot open shared object file: No such file or directory
ERROR 1: libgrass_raster.7.1.svn.so: cannot open shared object file: No such file or directory
ERROR 1: libgrass_raster.7.1.svn.so: cannot open shared object file: No such file or directory

Not sure if it has any other effect, tried a few functions which seem to work fine. Anything specific that shouldn't work with those errors which I could test?

comment:8 by neteler, 8 years ago

Got it.. You need to rebuild all addons, running

g.extension.all operation=rebuild
Last edited 8 years ago by neteler (previous) (diff)

comment:9 by pvanbosgeo, 8 years ago

Thanks for the suggestion. Unfortunately it doesn't seem to help. Rebuild all, start grass again, with same error messages. Puzzling

comment:10 by neteler, 8 years ago

Then try

strace grass73

No need to post it but it will show you at some point what seeks for it.

However, indeed GRASS works, right?

comment:11 by pvanbosgeo, 8 years ago

Checking all output created at start up of grass for any line with 7.1 in it, but nothing.

But yes, it seems to work all right based on the limited testing I did, so I guess I can just ignore it.

comment:12 by martinl, 8 years ago

Milestone: 7.3.07.4.0

Milestone renamed

comment:13 by neteler, 7 years ago

pvanbosgeo, is this still an issue?

comment:14 by neteler, 6 years ago

Resolution: worksforme
Status: newclosed

No answer, closing

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