Opened 5 years ago
Closed 5 years ago
#4259 closed defect (worksforme)
PostGIS 2.5 unable to compile with GDAL 2.3
| Reported by: | nstires | Owned by: | pramsey |
|---|---|---|---|
| Priority: | medium | Milestone: | PostGIS 2.5.2 |
| Component: | postgis | Version: | 2.5.x -- EOL |
| Keywords: | postgis gdal | Cc: |
Description
I'm attempting to build PostGIS 2.5 with the GDAL 2.3 libraries. It seems to require GDALv1 however. I saw that there's GDALv2 support on Windows however. I was unable to find a previous ticket that referenced the same issue.
[root@build rpm]# cat /etc/centos-release CentOS release 6.10 (Final) [root@build rpm]# java -version openjdk version "1.8.0_181" OpenJDK Runtime Environment (build 1.8.0_181-b13) OpenJDK 64-Bit Server VM (build 25.181-b13, mixed mode) [root@build rpm]# gdalinfo --version GDAL 2.3.2, released 2018/09/21 [root@build rpm]# gcc --version gcc (GCC) 4.8.2 20140120 (Red Hat 4.8.2-15) Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. [root@build rpm]# g++ --version g++ (GCC) 4.8.2 20140120 (Red Hat 4.8.2-15) Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
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[root@build rpm]# ll /usr/lib total 57444 drwxr-xr-x. 3 root root 4096 Sep 17 14:05 anaconda-runtime drwxr-xr-x. 5 root root 4096 Sep 17 14:52 ConsoleKit dr-xr-xr-x. 2 root root 4096 Sep 23 2011 games drwxr-xr-x. 3 root root 4096 Jun 19 08:10 gcc drwxr-xr-x. 2 root root 4096 May 10 2016 java drwxr-xr-x. 2 root root 4096 May 10 2016 java-1.3.1 drwxr-xr-x. 2 root root 4096 May 10 2016 java-1.4.0 drwxr-xr-x. 2 root root 4096 May 10 2016 java-1.4.1 drwxr-xr-x. 2 root root 4096 May 10 2016 java-1.4.2 drwxr-xr-x. 2 root root 4096 May 10 2016 java-1.5.0 drwxr-xr-x. 2 root root 4096 May 10 2016 java-1.6.0 drwxr-xr-x. 2 root root 4096 May 10 2016 java-1.7.0 drwxr-xr-x. 2 root root 4096 May 10 2016 java-1.8.0 drwxr-xr-x. 2 root root 4096 May 10 2016 java-ext drwxr-xr-x. 5 root root 4096 Sep 17 14:52 jvm drwxr-xr-x. 2 root root 4096 May 10 2016 jvm-commmon drwxr-xr-x. 5 root root 4096 Sep 17 14:52 jvm-exports drwxr-xr-x. 5 root root 4096 Sep 17 14:52 jvm-private -rw-r--r--. 1 root root 30521472 Oct 11 15:33 libgdal.a -rwxr-xr-x. 1 root root 523008 Oct 11 15:33 libgdalalljni.so lrwxrwxrwx. 1 root root 13 Nov 26 12:20 libgdalalljni.so.20 -> libgdaljni.so lrwxrwxrwx. 1 root root 16 Nov 26 12:20 libgdaljni.so -> libgdalalljni.so -rwxr-xr-x. 1 root root 1032 Oct 11 15:33 libgdal.la lrwxrwxrwx. 1 root root 17 Nov 26 12:20 libgdal.so -> libgdal.so.20.4.2 lrwxrwxrwx. 1 root root 17 Nov 26 12:20 libgdal.so.20 -> libgdal.so.20.4.2 -rwxr-xr-x. 1 root root 15799072 Oct 11 15:33 libgdal.so.20.4.2 -rwxr-xr-x. 1 root root 5934696 Oct 11 15:33 libltidsdk.so -rwxr-xr-x. 1 root root 5934696 Oct 11 15:33 libltidsdk.so.9 dr-xr-xr-x. 2 root root 4096 Sep 17 14:26 locale drwxr-xr-x. 2 root root 4096 Nov 26 12:20 pkgconfig drwxr-xr-x. 3 root root 4096 Aug 18 2016 python2.6 drwxr-xr-x. 4 root root 4096 Sep 17 14:29 rpm drwxr-xr-x. 4 root root 4096 Sep 17 14:30 ruby lrwxrwxrwx. 1 root root 30 Sep 17 14:26 sendmail -> /etc/alternatives/mta-sendmail lrwxrwxrwx. 1 root root 24 Sep 17 14:26 sendmail.postfix -> ../sbin/sendmail.postfix drwxr-xr-x. 2 root root 4096 Mar 22 2017 yum-plugins
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[root@build postgis25-2.5.1]# ./configure --with-pgconfig=/usr/pgsql-9.6/bin/pg_config checking for a BSD-compatible install... /usr/bin/install -c checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/ld checking if the linker (/opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /opt/rh/devtoolset-2/root/usr/bin/nm -B checking the name lister (/opt/rh/devtoolset-2/root/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... gawk checking command to parse /opt/rh/devtoolset-2/root/usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for cpp... /opt/rh/devtoolset-2/root/usr/bin/cpp checking if gcc supports -Wall... yes checking if gcc supports -Wmissing-prototypes... yes checking if gcc supports -ffloat-store... yes checking if gcc supports --exclude-libs... yes checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking for bison... bison -y checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking for vasprintf... yes checking for asprintf... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking whether isfinite is declared... yes checking whether isfinite is declared... yes checking for perl... /usr/bin/perl checking for xsltproc... /usr/bin/xsltproc checking for convert... no configure: WARNING: ImageMagick does not seem to be installed. Documentation cannot be built checking for dblatex... no configure: WARNING: dblatex is not installed so PDF documentation cannot be built checking for xmllint... /usr/bin/xmllint checking CUnit/CUnit.h usability... no checking CUnit/CUnit.h presence... no checking for CUnit/CUnit.h... no configure: WARNING: could not locate CUnit required for unit tests checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for libiconv_open in -liconv... no checking for iconv_open in -lc... yes checking for iconvctl... no checking for libiconvctl... no Using user-specified pg_config file: /usr/pgsql-9.6/bin/pg_config checking PostgreSQL version... PostgreSQL 9.6.11 checking libpq-fe.h usability... yes checking libpq-fe.h presence... yes checking for libpq-fe.h... yes checking for PQserverVersion in -lpq... yes checking for xml2-config... /usr/bin/xml2-config checking libxml/tree.h usability... yes checking libxml/tree.h presence... yes checking for libxml/tree.h... yes checking libxml/parser.h usability... yes checking libxml/parser.h presence... yes checking for libxml/parser.h... yes checking libxml/xpath.h usability... yes checking libxml/xpath.h presence... yes checking for libxml/xpath.h... yes checking libxml/xpathInternals.h usability... yes checking libxml/xpathInternals.h presence... yes checking for libxml/xpathInternals.h... yes checking for xmlInitParser in -lxml2... yes checking for geos-config... /usr/bin/geos-config checking GEOS version... 3.5.0 checking geos_c.h usability... yes checking geos_c.h presence... yes checking for geos_c.h... yes checking for initGEOS in -lgeos_c... yes checking for sfcgal-config... no checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether NLS is requested... yes checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for ld used by GCC... /opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/ld -m elf_x86_64 checking if the linker (/opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/ld -m elf_x86_64) is GNU ld... yes checking for shared library run path origin... /bin/sh: build-aux/config.rpath: No such file or directory done checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc checking proj_api.h usability... yes checking proj_api.h presence... yes checking for proj_api.h... yes checking for pj_get_release in -lproj... yes checking json/json.h usability... yes checking json/json.h presence... yes checking for json/json.h... yes checking for json_object_get in -ljson-c... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for PROTOBUFC... no checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes TOPOLOGY: Topology support requested RASTER: Raster support requested checking for gdal-config... /usr/bin/gdal-config checking GDAL version... 2.3.2 checking for OGR enabled... yes checking gdal.h usability... yes checking gdal.h presence... yes checking for gdal.h... yes checking ogr_api.h usability... yes checking ogr_api.h presence... yes checking for ogr_api.h... yes checking cpl_conv.h usability... yes checking cpl_conv.h presence... yes checking for cpl_conv.h... yes checking for library containing GDALAllRegister... no configure: error: could not find GDAL
Attachments (1)
Change History (5)
comment:1 by , 5 years ago
by , 5 years ago
| Attachment: | config.log added |
|---|
comment:2 by , 5 years ago
Thanks for getting back to me @Algunenano!
I've attached the config.log. I do have the aforementioned output from gdal-config:
[root@build postgis25-2.5.1]# gdal-config --cflags -I/usr/include [root@build postgis25-2.5.1]# gdal-config --libs -L/usr/lib64 -lgdal
Version 0, edited 5 years ago by (next)
comment:3 by , 5 years ago
One thing of note: the lib path is set to lib64, but they actually reside within /usr/lib. I've also built the gdal packages, is this a build flag?
Most likely your /usr/lib64 just points to /usr/lib:
$ ls -al /usr/lib64 lrwxrwxrwx 1 root root 3 ago 21 16:21 /usr/lib64 -> lib
The problem appears to reside in your GDAL installation. From the log:
configure:17642: gcc -o conftest -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -I/usr/include conftest.c -L/usr/lib64 -lgdal >&5 /usr/lib/libgdal.so: undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' /usr/lib/libgdal.so: undefined reference to `std::_Hash_bytes(void const*, unsigned long, unsigned long)' /usr/lib/libgdal.so: undefined reference to `std::__detail::_List_node_base::_M_unhook()' /usr/lib/libgdal.so: undefined reference to `std::__detail::_Prime_rehash_policy::_M_next_bkt(unsigned long) const' /usr/lib/libgdal.so: undefined reference to `std::__detail::_List_node_base::_M_transfer(std::__detail::_List_node_base*, std::__detail::_List_node_base*)' /usr/lib/libgdal.so: undefined reference to `std::__detail::_Prime_rehash_policy::_M_need_rehash(unsigned long, unsigned long, unsigned long) const' /usr/lib/libgdal.so: undefined reference to `std::string::back()' collect2: error: ld returned 1 exit status configure:17642: $? = 1 configure: failed program was:
You might be mixing gcc or libstdc++ releases so you'll need to find how to sort it out.
comment:4 by , 5 years ago
| Resolution: | → worksforme |
|---|---|
| Status: | new → closed |
Closing this out as it seems specific to the user setup and not a PostGIS specific issue.
Note:
See TracTickets
for help on using tickets.
Not at all. In Travis (https://travis-ci.org/postgis/postgis/) you can see it building against multiple releases of Gdal (1.1, 2.2 and 2.3).
That step is trying to link against gdal using the flags provided by
gdal-config. Please check that the output ofgdal-configmatches what's installed in your system:If that's correct, please check the output of
config.logfor the compiler error message.